Build.PL
Changes
LICENSE
META.json
README.md
cpanfile
doc/Scer.md
lib/App/Egaz.pm
lib/App/Egaz/Command/blastn.pm
lib/App/Egaz/Command/exactmatch.pm
lib/App/Egaz/Command/formats.pm
lib/App/Egaz/Command/lastz.pm
lib/App/Egaz/Command/lav2axt.pm
lib/App/Egaz/Command/lav2psl.pm
lib/App/Egaz/Command/lpcnam.pm
lib/App/Egaz/Command/masked.pm
lib/App/Egaz/Command/maskfasta.pm
lib/App/Egaz/Command/multiz.pm
lib/App/Egaz/Command/normalize.pm
lib/App/Egaz/Command/partition.pm
lib/App/Egaz/Command/plottree.pm
lib/App/Egaz/Command/prepseq.pm
lib/App/Egaz/Command/raxml.pm
lib/App/Egaz/Common.pm
minil.toml
script/egaz
share/check_dep.sh
share/matrix/default
share/matrix/distant
share/matrix/similar
share/matrix/similar2
share/parameters.yml
share/plot_tree.R
t/01-basic.t
t/02-commands.t
t/03-exactmatch.t
t/04-lav2axt.t
t/05-lav2psl.t
t/06-formats.t
t/07-maskfasta.t
t/08-masked.t
t/09-partition.t
t/10-normalize.t
t/11-raxml.t
t/12-plottree.t
t/13-blastn.t
t/14-lastz.t
t/15-prepseq.t
t/16-lpcnam.t
t/17-multiz.t
t/Q_rubravsQ_aliena/mafSynNet/NC_020152.synNet.maf.gz
t/Q_rubravsQ_aquifolioides/mafSynNet/NC_020152.synNet.maf.gz
t/Q_rubravsQ_baronii/mafSynNet/NC_020152.synNet.maf.gz
t/Quercus.nwk
t/YDL184C.fas
t/YDL184C.nwk
t/default.lav
t/default.psl
t/default.relative.lav
t/lav.tar.gz
t/partition.q.lav
t/partition.q.norm.lav
t/partition.t.lav
t/partition.t.norm.lav
t/pig2.fa
t/pig2.fa[10001,18000]
t/pseudocat.fa
t/pseudocat.fa[5001,10100]
t/pseudocat/cat.fa
t/pseudocat/cat.fa[1,10100]
t/pseudocat/cat.fa[10001,18803]
t/pseudocat/chr.2bit
t/pseudocat/chr.sizes
t/pseudopig.fa
t/pseudopig/chr.2bit
t/pseudopig/chr.sizes
t/pseudopig/pig1.fa
t/pseudopig/pig1.fa[1,10000]
t/pseudopig/pig1.fa[10001,20000]
t/pseudopig/pig1.fa[20001,22929]
t/pseudopig/pig2.fa
t/pseudopig/pig2.fa[1,10000]
t/pseudopig/pig2.fa[10001,20000]
t/pseudopig/pig2.fa[20001,22929]
META.yml
MANIFEST